About

cytomarker is an R shiny application designed to facilitate interactive cytometry panel design using scRNA-seq data. cytomarker provides a robust statistical method for resolving cell type populations of interest using a multinomial logistic regression model for gene markers of interest. Using cytomarker's data visualization components and extensive collection of configuration and runtime options, researchers are able to interactively construct balanced antibody panels with minimal redundancy and high sensitivity to resolving cell type populations in scRNA-seq datasets.

cytomarker is co-developed by members of the Campbell and Jackson Labs at the Lunenfeld Tanenbaum Research Institute, Mount Sinai Hospital, in Toronto.

List of Authors

The following members of the Campbell and Jackson Labs have contributed authorship to cytomarker:

• Kieran Campbell
• Hartland Jackson
• Eunice Poon
• Michael Geuenich
• Matthew Watson